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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 136total RNA-seq
  • 114ChIP-seq
  • 27single cell RNA-seq
  • 1ATAC-seq
  • 1Hi-C
Assay category
  • 163Transcription
  • 114DNA binding
  • 13D chromatin structure
  • 1DNA accessibility
Target of assay
  • 76control
  • 25transcription factor
  • 13histone
  • 13histone modification
  • 9narrow histone mark
  • 4broad histone mark
  • 2RNA binding protein
  • 1recombinant protein
Date released
  • 127August, 2017
  • 47November, 2017
  • 26September, 2018
  • 25July, 2018
  • 14February, 2018
  • 14October, 2018
  • 8December, 2017
  • 8January, 2019
  • 5November, 2018
  • 2October, 2017
  • 1August, 2018
  • 1December, 2018
  • 1June, 2018
Available data
  • 562fastq
  • 560bam
  • 482bigWig
  • bed narrowPeak
  • 244bigBed narrowPeak
  • 163tsv
  • 17bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • 10bigBed broadPeak
Organism
  • 278Homo sapiens
Biosample type
  • 139tissue
  • 67primary cell
  • 58cell line
  • 15in vitro differentiated cells
Organ
  • 158pancreas
  • 66liver
  • 43epithelium
  • 27connective tissue
  • 24adipose tissue
  • 4blood
  • 4bodily fluid
  • 4embryo
  • 3spleen
  • 1brain
Project
  • 279AMP
Genome assembly (visualization)
  • 200hg19
  • 195GRCh38
Lab
  • 278AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 7inconsistent ontology term
Audit category:
  • 31missing controlled_by
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

279 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
Hi-C
tissue
islet of Langerhans8961
liver12
white adipose tissue12
subcutaneous adipose tissue7
omental fat pad4
primary cell
pancreatic beta cell102
pancreatic endocrine cell12
pancreatic alpha cell101
pancreatic acinar cell44
pancreatic ductal cell42
cell line
HepG25481
GM128784
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
primitive gut cell2
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