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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 37single cell RNA-seq
  • 27ChIP-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
Assay category
  • 37Transcription
  • 27DNA binding
  • 6DNA methylation
  • 2DNA accessibility
Target of assay
  • 20control
  • 6transcription factor
  • 1RNA binding protein
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 21April, 2018
  • 11December, 2017
  • 11July, 2018
  • 10August, 2017
  • 5January, 2018
  • 4November, 2017
  • 4November, 2018
  • 4October, 2018
  • 1August, 2018
  • 1January, 2019
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 187fastq
  • 178bam
  • 160bigWig
  • bed narrowPeak
  • 88bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 77Homo sapiens
Biosample type
  • 37primary cell
  • 18in vitro differentiated cells
  • 15tissue
  • 5cell line
  • 2stem cell
Organ
  • 33pancreas
  • 29epithelium
  • 9connective tissue
  • 7liver
  • 6embryo
  • 4adipose tissue
  • 1blood
  • 1bodily fluid
  • 1brain
  • 1spleen
Project
  • 76AMP
  • 1HPAP
Genome assembly (visualization)
  • 49GRCh38
  • 44hg19
  • 5hg18
Lab
  • 75AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 6missing controlled_by
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

77 results

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Clear Filters
single cell RNA-seq
ChIP-seq
WGBS
GRO-seq
ATAC-seq
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
in vitro differentiated cells
adipocyte5
pancreatic endoderm31
Hepatic endoderm2
Posterior foregut11
definitive endodermal cell11
tissue
adipose tissue3
body of pancreas3
islet of Langerhans11
pancreas2
cerebellum (Hemisphere)1
cell line
HepG24
GM128781
stem cell
hESC11
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