Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 60ChIP-seq
  • 4RRBS
Assay category
  • 60DNA binding
  • 4DNA methylation
Target of assay
  • 54control
  • 5histone
  • 5histone modification
  • 3broad histone mark
  • 2narrow histone mark
  • 1transcription factor
Date released
  • 22August, 2017
  • 16November, 2017
  • 8December, 2017
  • 8February, 2018
  • 6September, 2017
  • 3October, 2017
  • 1January, 2019
Available data
  • 264fastq
  • 258bam
  • 215bigWig
  • bed narrowPeak
  • 148bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • 37bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 63Homo sapiens
Biosample type
  • 18tissue
  • 17primary cell
  • 14cell line
  • 14in vitro differentiated cells
  • 1stem cell
Organ
  • 21pancreas
  • 16liver
  • 15epithelium
  • 6brain
  • 6embryo
  • 2musculature of body
  • 2vasculature
  • 1adipose tissue
  • 1blood
  • 1blood vessel
  • 1bodily fluid
  • 1connective tissue
Project
  • 64AMP
Genome assembly (visualization)
  • 26hg19
  • 8GRCh38
Lab
  • 64AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 3missing controlled_by
Audit category:
  • 2inconsistent control read length
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

64 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
RRBS
tissue
islet of Langerhans7
brain3
liver21
pancreas2
skeletal muscle tissue2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
skeletal muscle myoblast11
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cell line
HepG213
GM128781
in vitro differentiated cells
pancreatic endoderm5
definitive endodermal cell2
primitive gut cell2
Hepatic endoderm1
Posterior foregut1
stem cell
hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego