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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 23ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 23DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 22control
  • 1recombinant protein
  • 1transcription factor
Date released
  • 12October, 2018
  • 7August, 2020
  • 5November, 2018
  • 4September, 2020
  • 2December, 2017
  • 2November, 2017
  • 1August, 2017
  • 1January, 2019
Available data
  • 203fastq
  • 193bam
  • 180bigWig
  • bed narrowPeak
  • 140bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 34Homo sapiens
Biosample type
  • 17tissue
  • 11primary cell
  • 4cell line
  • 2in vitro differentiated cells
Organ
  • 13pancreas
  • 11epithelium
  • 10connective tissue
  • 9adipose tissue
  • 5liver
  • 4spleen
  • 1blood
  • 1bodily fluid
Project
  • 23AMP
  • 11HPAP
Genome assembly (visualization)
  • 10GRCh38
Lab
  • 23AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1missing controlled_by
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

34 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
tissue
omental fat pad5
spleen4
subcutaneous adipose tissue4
body of pancreas3
right lobe of liver1
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
cell line
HepG23
GM128781
in vitro differentiated cells
adipocyte1
hepatocyte1
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