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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 130total RNA-seq
  • 85single cell RNA-seq
  • 52WGBS
  • 51ATAC-seq
  • 48snATAC-seq
  • 41ChIP-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 215Transcription
  • 99DNA accessibility
  • 52DNA methylation
  • 41DNA binding
  • 13D chromatin structure
Target of assay
  • 41control
Date released
  • 140May, 2022
  • 93August, 2017
  • 45February, 2021
  • 27September, 2018
  • 25September, 2020
  • 24October, 2018
  • 11November, 2018
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 5December, 2018
  • 5January, 2019
  • 4November, 2017
  • 2August, 2018
  • 2December, 2017
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
Available data
  • 455fastq
  • 373bam
  • 318bigWig
  • bed narrowPeak
  • 147bigBed narrowPeak
  • 146tsv
  • 135zippedFastqFolder
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 409Homo sapiens
Biosample type
  • 257primary cell
  • 138tissue
  • 13cell line
  • 1in vitro differentiated cells
Organ
  • 241pancreas
  • 135epithelium
  • 18adipose tissue
  • 18connective tissue
  • 17liver
  • 9spleen
  • 2blood
  • 2bodily fluid
Project
  • 211HPAP
  • 198AMP
Genome assembly (visualization)
  • 156GRCh38
  • 141hg19
Lab
  • 211Klaus Kaestner, Upenn
  • 190AMP-T2D consortium
  • 6Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

409 results

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Clear Filters
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
ChIP-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell1033129
pancreatic beta cell1021616
pancreatic acinar cell424
pancreatic ductal cell42
tissue
islet of Langerhans972
subcutaneous adipose tissue10
spleen27
body of pancreas25
omental fat pad7
cell line
HepG25141
GM128782
in vitro differentiated cells
white fat cell1
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