Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 130total RNA-seq
  • 85single cell RNA-seq
  • 51ATAC-seq
  • 48snATAC-seq
  • 41ChIP-seq
  • 5WGBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 215Transcription
  • 99DNA accessibility
  • 41DNA binding
  • 5DNA methylation
  • 13D chromatin structure
Target of assay
  • 41control
Date released
  • 99May, 2022
  • 93August, 2017
  • 39February, 2021
  • 27September, 2018
  • 25September, 2020
  • 24October, 2018
  • 11November, 2018
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 5December, 2018
  • 5January, 2019
  • 4November, 2017
  • 2August, 2018
  • 2December, 2017
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
Available data
  • 449fastq
  • 373bam
  • 318bigWig
  • bed narrowPeak
  • 147bigBed narrowPeak
  • 140tsv
  • 94zippedFastqFolder
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 362Homo sapiens
Biosample type
  • 210primary cell
  • 138tissue
  • 13cell line
  • 1in vitro differentiated cells
Organ
  • 194pancreas
  • 88epithelium
  • 18adipose tissue
  • 18connective tissue
  • 17liver
  • 9spleen
  • 2blood
  • 2bodily fluid
Project
  • 198AMP
  • 164HPAP
Genome assembly (visualization)
  • 156GRCh38
  • 141hg19
Lab
  • 190AMP-T2D consortium
  • 164Klaus Kaestner, Upenn
  • 6Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

362 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell10329
pancreatic beta cell10216
pancreatic acinar cell424
pancreatic ductal cell42
tissue
islet of Langerhans972
subcutaneous adipose tissue10
spleen72
body of pancreas52
omental fat pad7
cell line
HepG25411
GM128782
in vitro differentiated cells
white fat cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego