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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 178ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 1ATAC-seq
Assay category
  • 209Transcription
  • 178DNA binding
  • 10DNA methylation
  • 1DNA accessibility
Target of assay
  • 127control
  • 32transcription factor
  • 19histone
  • 19histone modification
  • 12narrow histone mark
  • 7broad histone mark
  • 3RNA binding protein
  • 1recombinant protein
Date released
  • 76February, 2023
  • 73August, 2017
  • 65November, 2017
  • 42July, 2018
  • 37April, 2018
  • 35September, 2020
  • 23February, 2018
  • 20December, 2017
  • 6September, 2017
  • 5January, 2018
  • 5October, 2018
  • 4January, 2019
  • 4November, 2018
  • 4October, 2017
  • 2August, 2018
  • 2June, 2018
Available data
  • 908fastq
  • 802bam
  • 692bigWig
  • bed narrowPeak
  • 382bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 402Homo sapiens
Biosample type
  • 217primary cell
  • 70tissue
  • 67cell line
  • 47in vitro differentiated cells
  • 2stem cell
Organ
  • 166pancreas
  • 126epithelium
  • 80liver
  • 31connective tissue
  • 17adipose tissue
  • 13embryo
  • 7brain
  • 4blood
  • 4bodily fluid
  • 2musculature of body
  • 2vasculature
  • 1blood vessel
  • 1spleen
Project
  • 292AMP
  • 111HPAP
Genome assembly (visualization)
  • 172hg19
  • 150GRCh38
  • 5hg18
Lab
  • 292AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 9inconsistent ontology term
Audit category:
  • 41missing controlled_by
Audit category:
  • 2inconsistent control read length
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

403 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
ATAC-seq
primary cell
pancreatic alpha cell64210
exocrine cell39
pancreatic beta cell61110
Langerhans cell19
pancreatic endocrine cell12
tissue
islet of Langerhans166
liver1311
white adipose tissue12
pancreas32
adipose tissue13
cell line
HepG263
GM128784
in vitro differentiated cells
adipocyte11
pancreatic endoderm641
definitive endodermal cell221
primitive gut cell221
embryonic stem cell12
stem cell
hESC11
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