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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
84
RNA microarray
6
single cell RNA-seq
3
ChIP-seq
3
snDrop-seq
1
pCHi-C
Assay category
102
Transcription
3
DNA binding
Target of assay
3
control
Date released
314
May, 2020
264
May, 2021
210
August, 2021
193
February, 2021
190
August, 2017
166
July, 2018
121
October, 2019
93
November, 2017
83
July, 2019
59
March, 2020
51
February, 2023
47
April, 2018
47
September, 2023
28
May, 2022
27
September, 2018
24
November, 2019
23
February, 2018
23
February, 2020
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
November, 2018
14
May, 2023
13
October, 2018
11
October, 2017
10
December, 2019
10
November, 2020
9
January, 2019
7
January, 2018
6
September, 2017
5
December, 2018
5
June, 2019
5
March, 2023
3
August, 2018
3
June, 2018
3
March, 2019
1
August, 2022
1
October, 2022
Available data
121
bam
104
tsv
101
bigWig
89
txt
bed narrowPeak
8
tagAlign
6
csv
1
bed bed3
1
bed bed3+
Organism
193
Homo sapiens
Biosample type
93
tissue
82
cell line
18
in vitro differentiated cells
Organ
connective tissue
386
adipose tissue
142
bone element
54
artery
54
blood vessel
54
heart
54
vasculature
26
epithelium
26
pancreas
8
kidney
2
liver
Project
193
AMP
Genome assembly (visualization)
97
hg19
96
GRCh38
Lab
193
AMP-T2D consortium
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
5
audit script error
files.file_type!
bed narrowPeak
lab.title!
Klaus Kaestner, Upenn
Mark McCarthy, Oxford
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
193 results
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Clear Filters
total RNA-seq
RNA microarray
single cell RNA-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
52
2
EndoC_BH1
26
HepG2
1
iPSC derived cell line
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
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