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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
total RNA-seq
7
ChIP-seq
4
ATAC-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
10
Transcription
7
DNA binding
4
DNA accessibility
Target of assay
7
control
Date released
February, 2021
8
February, 2023
5
October, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
May, 2019
1
May, 2021
Available data
bed narrowPeak
36
bam
29
bigWig
25
bigBed narrowPeak
6
tsv
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
Organism
22
Homo sapiens
Biosample type
19
tissue
3
primary cell
Organ
699
pancreas
348
liver
341
epithelium
163
kidney
155
connective tissue
148
heart
92
adipose tissue
83
brain
49
vasculature
47
blood vessel
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
13
artery
11
spleen
9
bone element
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
1
T1D
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
21
AMP-T2D consortium
1
Kyle Gaulton, UCSD
files.file_type!
bed narrowPeak
lab.title!
Stephen Parker, UMich
month_released!
February, 2021
BIOSAMPLE
ASSAY
22 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
tissue
tibial artery
1
5
coronary artery
1
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 2 more…
primary cell
endothelial cell of coronary artery
1
megakaryocyte
1
smooth muscle cell of the coronary artery
1
See all biosamples
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