Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
total RNA-seq
10
ChIP-seq
4
pCHi-C
2
single cell RNA-seq
1
ATAC-seq
1
RRBS
Assay category
25
Transcription
10
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
8
control
2
histone
2
histone modification
2
narrow histone mark
Date released
February, 2021
26
October, 2019
4
February, 2023
3
February, 2020
3
July, 2019
2
August, 2021
2
May, 2019
1
June, 2019
Available data
bed narrowPeak
43
bam
35
bigWig
31
bigBed narrowPeak
11
tsv
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
41
Homo sapiens
Biosample type
37
tissue
4
primary cell
Organ
699
pancreas
348
liver
341
epithelium
163
kidney
155
connective tissue
148
heart
92
adipose tissue
83
brain
49
vasculature
47
blood vessel
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
13
artery
11
spleen
9
bone element
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
41
AMP-T2D consortium
files.file_type!
bed narrowPeak
lab.title!
Stephen Parker, UMich
month_released!
February, 2021
BIOSAMPLE
ASSAY
41 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
single cell RNA-seq
ATAC-seq
RRBS
tissue
islet of Langerhans
14
2
4
1
tibial artery
1
5
coronary artery
1
2
retina
3
pigmented layer of retina
2
+ See 1 more…
primary cell
retinal pigment epithelial cell
1
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
Download