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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
1
DNase-seq
Assay category
163
DNA binding
89
Transcription
15
DNA methylation
1
DNA accessibility
Target of assay
91
histone
91
histone modification
53
broad histone mark
50
control
38
narrow histone mark
23
transcription factor
RNA binding protein
Date released
692
February, 2021
314
May, 2020
268
August, 2017
261
May, 2021
213
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
125
October, 2019
101
July, 2019
91
November, 2017
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2018
14
April, 2019
14
November, 2020
10
December, 2019
10
October, 2017
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
279
fastq
274
bam
264
bigWig
bed narrowPeak
89
tsv
85
tagAlign
40
bigBed narrowPeak
39
bed broadPeak
31
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
267
Homo sapiens
Biosample type
217
tissue
26
primary cell
25
in vitro differentiated cells
Organ
138
pancreas
79
connective tissue
54
adipose tissue
36
liver
13
musculature of body
12
epithelium
Project
268
AMP
Genome assembly (visualization)
133
hg19
130
GRCh38
Lab
268
AMP-T2D consortium
Audit category:
37
missing controlled_by
files.file_type!
bed narrowPeak
lab.title!
Stephen Parker, UMich
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
268 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
tissue
islet of Langerhans
23
89
subcutaneous abdominal adipose tissue
35
3
liver
31
3
1
skeletal muscle tissue
9
4
white adipose tissue
12
+ See 3 more…
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
1
1
in vitro differentiated cells
adipocyte
25
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