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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
66
ChIP-seq
6
WGBS
3
small RNA-seq
2
ATAC-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
66
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
12
transcription factor
10
narrow histone mark
Date released
386
February, 2021
54
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
March, 2020
1
May, 2023
1
October, 2019
Available data
442
bam
425
bigWig
400
tsv
44
fastq
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
476
Homo sapiens
Biosample type
474
tissue
2
primary cell
1
in vitro differentiated cells
Organ
721
pancreas
607
connective tissue
477
adipose tissue
368
epithelium
347
liver
195
heart
169
kidney
151
bone element
99
vasculature
97
blood vessel
81
brain
67
artery
31
musculature of body
30
limb
28
eye
23
embryo
16
nerve
15
blood
15
bodily fluid
10
spleen
8
skeleton
8
vein
4
gonad
4
ovary
2
pericardium
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
477
AMP
Genome assembly (visualization)
413
GRCh38
413
hg19
Lab
477
AMP-T2D consortium
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
lab.title!
Xin Sun, UCSD
month_released!
March, 2020
organ_slims!
large intestine
BIOSAMPLE
ASSAY
477 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
ATAC-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
2
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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