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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
37
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
31
control
20
histone
20
histone modification
narrow histone mark
9
broad histone mark
Date released
19
November, 2017
17
July, 2019
12
February, 2020
9
October, 2017
9
October, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
138
bam
116
bigWig
bed narrowPeak
94
bigBed narrowPeak
64
tagAlign
39
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
72
Homo sapiens
Biosample type
62
tissue
10
primary cell
Organ
591
connective tissue
515
pancreas
468
adipose tissue
304
liver
214
epithelium
202
heart
150
bone element
102
vasculature
100
blood vessel
72
brain
67
artery
44
kidney
34
musculature of body
29
limb
26
eye
22
embryo
16
nerve
11
spleen
8
skeleton
8
vein
7
blood
7
bodily fluid
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
21
hg19
14
GRCh38
Lab
72
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
target.investigated_as!
narrow histone mark
nucleotide modification
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
8
1
1
1
cerebellum (Hemisphere)
2
1
1
1
layer of hippocampus
5
cingulate gyrus
4
temporal lobe
2
1
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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