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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
10
total RNA-seq
6
Hi-C
5
ATAC-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
13
Transcription
12
DNA binding
6
3D chromatin structure
6
DNA accessibility
6
DNA methylation
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
10
July, 2019
8
February, 2023
5
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
bed narrowPeak
68
bigWig
65
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
5
txt
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
44
Homo sapiens
Biosample type
39
tissue
5
primary cell
Organ
606
connective tissue
529
pancreas
478
adipose tissue
313
liver
215
epithelium
202
heart
150
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
44
kidney
36
musculature of body
30
limb
28
eye
23
embryo
16
nerve
11
spleen
9
vein
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
17
hg19
7
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
1
1
4
1
1
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
See all biosamples
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