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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
11
ATAC-seq
11
single cell RNA-seq
6
snATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
64
Transcription
17
DNA accessibility
1
3D chromatin structure
Date released
64
August, 2021
14
May, 2023
4
March, 2023
Available data
bed narrowPeak
64
xls
57
txt
1
hic
Organism
78
Homo sapiens
Biosample type
78
tissue
2
cell line
2
stem cell
Organ
78
kidney
Project
78
AMP
4
community
Genome assembly (visualization)
11
GRCh38
1
hg19
Lab
2369
AMP-T2D consortium
324
Klaus Kaestner, Upenn
211
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
files.file_type!
bed narrowPeak
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
82 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
49
11
11
6
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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