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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
RRBS
1
pCHi-C
Assay category
18
DNA binding
9
Transcription
5
3D chromatin structure
3
DNA methylation
Target of assay
13
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
9
May, 2019
8
July, 2019
8
October, 2019
4
August, 2021
4
March, 2020
2
November, 2017
1
February, 2020
Available data
83
bam
70
bigWig
bed narrowPeak
58
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
10
tsv
9
bed bed3+
6
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
36
Homo sapiens
Biosample type
22
tissue
14
primary cell
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
192
heart
166
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
14
hg19
5
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed narrowPeak
month_released!
April, 2019
organ_slims!
artery
pituitary gland
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
RRBS
pCHi-C
tissue
aorta
2
1
1
4
2
1
thoracic aorta
4
2
ascending aorta
3
2
primary cell
endothelial cell of umbilical vein
7
2
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of hepatic sinusoid
1
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