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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
Assay category
36
DNA binding
Target of assay
262
control
55
histone
55
histone modification
36
narrow histone mark
22
transcription factor
19
broad histone mark
8
RNA binding protein
5
nucleotide modification
1
recombinant protein
Date released
August, 2017
22
October, 2019
12
May, 2021
1
December, 2017
1
November, 2017
Available data
274
bigWig
bed narrowPeak
248
bam
104
bigBed narrowPeak
91
tagAlign
54
fastq
7
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
Organism
36
Homo sapiens
Biosample type
21
tissue
11
in vitro differentiated cells
3
primary cell
1
cell line
Organ
brain
4
gonad
4
ovary
2
eye
1
blood vessel
1
connective tissue
1
embryo
1
epithelium
1
limb
1
liver
1
lymph node
1
vasculature
1
vein
Project
36
AMP
Genome assembly (visualization)
1
hg19
Lab
26
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
bed narrowPeak
month_released!
August, 2017
organ_slims!
bone element
brain
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
tissue
islet of Langerhans
21
in vitro differentiated cells
embryonic stem cell
10
pancreatic endoderm
1
primary cell
endothelial cell of umbilical vein
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
cell line
HepG2
1
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