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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
11
ChIP-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
14
Transcription
11
DNA binding
9
DNA accessibility
Target of assay
10
control
1
histone
1
histone modification
1
narrow histone mark
Date released
8
August, 2021
8
January, 2021
7
February, 2018
5
December, 2017
January, 2019
3
November, 2018
2
January, 2018
2
May, 2021
Available data
78
bam
69
bigWig
69
fastq
bed narrowPeak
39
bigBed narrowPeak
14
tsv
3
bed bed3+
Organism
35
Homo sapiens
Biosample type
15
in vitro differentiated cells
12
cell line
8
primary cell
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
345
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
12
blood
12
bodily fluid
10
spleen
9
vein
8
skeleton
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
27
AMP
8
T1D
Genome assembly (visualization)
16
hg19
15
GRCh38
1
hg18
Lab
27
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
January, 2019
organ_slims!
gonad
BIOSAMPLE
ASSAY
35 results
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total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
6
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
GM12878
3
1
primary cell
peripheral blood mononuclear cell
8
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