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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
36
ChIP-seq
6
WGBS
3
small RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
36
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
30
histone
histone modification
24
control
20
broad histone mark
12
transcription factor
10
narrow histone mark
Date released
386
February, 2021
24
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
441
bam
423
bigWig
401
tsv
43
fastq
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
447
Homo sapiens
Biosample type
445
tissue
2
primary cell
1
in vitro differentiated cells
Organ
703
pancreas
566
connective tissue
448
adipose tissue
368
epithelium
328
liver
202
heart
171
kidney
151
bone element
98
vasculature
96
blood vessel
67
artery
63
brain
30
musculature of body
29
limb
26
eye
22
embryo
20
lung
16
nerve
15
blood
bodily fluid
11
spleen
8
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
448
AMP
Genome assembly (visualization)
413
GRCh38
413
hg19
Lab
448
AMP-T2D consortium
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
March, 2019
organ_slims!
bodily fluid
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
448 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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