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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
22
ChIP-seq
16
total RNA-seq
3
ATAC-seq
Assay category
56
Transcription
22
DNA binding
3
DNA accessibility
Target of assay
21
control
1
histone
1
histone modification
1
narrow histone mark
Date released
692
February, 2021
314
May, 2020
268
August, 2017
261
May, 2021
213
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
124
October, 2019
101
July, 2019
91
November, 2017
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2018
14
April, 2019
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
131
fastq
90
bam
71
bigWig
bed narrowPeak
46
bigBed narrowPeak
19
zippedFastqFolder
15
bed bed3+
Organism
81
Homo sapiens
Biosample type
59
primary cell
12
tissue
9
in vitro differentiated cells
1
stem cell
Organ
22
epithelium
19
pancreas
13
liver
5
embryo
Project
59
HPAP
22
AMP
Genome assembly (visualization)
8
GRCh38
5
hg19
Lab
59
Klaus Kaestner, Upenn
22
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
organ_slims!
skin of body
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
81 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
tissue
liver
9
right lobe of liver
3
in vitro differentiated cells
pancreatic endoderm
3
Hepatic endoderm
2
Posterior foregut
1
definitive endodermal cell
1
hepatocyte
1
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stem cell
hESC
1
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