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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 545total RNA-seq
  • 84RNA microarray
  • 27snATAC-seq
  • 18single cell RNA-seq
  • 6WGBS
  • 4ATAC-seq
  • 3ChIP-seq
  • 3snDrop-seq
  • 2pCHi-C
Assay category
  • 563Transcription
  • 31DNA accessibility
  • 6DNA methylation
  • 3DNA binding
Target of assay
  • 3control
Date released
  • 692February, 2021
  • 314May, 2020
  • 269August, 2017
  • 266May, 2021
  • 213August, 2021
  • 168July, 2018
  • 162May, 2022
  • 140February, 2023
  • 125October, 2019
  • 101July, 2019
  • 93November, 2017
  • 61March, 2020
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 31October, 2018
  • 27September, 2018
  • 25February, 2020
  • 24November, 2019
  • 23February, 2018
  • 23May, 2019
  • 22December, 2017
  • 19April, 2020
  • 16January, 2021
  • 15April, 2019
  • 15May, 2023
  • 15November, 2018
  • 14November, 2020
  • 11October, 2017
  • 10December, 2019
  • 9January, 2019
  • 8January, 2018
  • 8June, 2019
  • 7August, 2020
  • 6September, 2017
  • 5December, 2018
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 572bam
  • 559tsv
  • 551bigWig
  • 89txt
  • 45fastq
  • bed narrowPeak
  • 8tagAlign
  • 6csv
  • 4bed bedgraph
  • 2bed bed3
  • 2bed bed3+
Organism
  • 692Homo sapiens
Biosample type
  • 537tissue
  • 82cell line
  • 47primary cell
  • 26in vitro differentiated cells
Organ
  • 454connective tissue
  • 386adipose tissue
  • 142bone element
  • 54artery
  • 54blood vessel
  • 54heart
  • 54vasculature
  • 32epithelium
  • 32pancreas
  • 8kidney
  • 2liver
Project
  • 647AMP
  • 45HPAP
Genome assembly (visualization)
  • 551hg19
  • 545GRCh38
Lab
  • 647AMP-T2D consortium
  • 45Klaus Kaestner, Upenn
Audit category:
  • 128inconsistent ontology term
  • 32audit script error
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

692 results

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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
ATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue381
bone element84
bone tissue58
kidney5
visceral abdominal adipose tissue3
cell line
smooth muscle cell of the coronary artery522
EndoC_BH126
HepG21
iPSC derived cell line1
primary cell
Langerhans cell2712
pancreatic alpha cell6
osteoblast11
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)18
adipocyte44
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