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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 182total RNA-seq
  • 45ChIP-seq
  • 21ATAC-seq
  • 17pCHi-C
  • 1DNAme array
Assay category
  • 182Transcription
  • 45DNA binding
  • 21DNA accessibility
  • 1DNA methylation
Target of assay
  • 24histone
  • 24histone modification
  • 12broad histone mark
  • 12narrow histone mark
  • 12transcription factor
  • 9control
  • 5RNA binding protein
Date released
  • 692February, 2021
  • 314May, 2020
  • 269August, 2017
  • 266May, 2021
  • 213August, 2021
  • 168July, 2018
  • 162May, 2022
  • 140February, 2023
  • 125October, 2019
  • 101July, 2019
  • 93November, 2017
  • 61March, 2020
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 31October, 2018
  • 27September, 2018
  • 25February, 2020
  • 24November, 2019
  • 23February, 2018
  • 23May, 2019
  • 22December, 2017
  • 19April, 2020
  • 16January, 2021
  • 15April, 2019
  • 15May, 2023
  • 15November, 2018
  • 14November, 2020
  • 11October, 2017
  • 10December, 2019
  • 9January, 2019
  • 8January, 2018
  • 8June, 2019
  • 7August, 2020
  • 6September, 2017
  • 5December, 2018
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 303bigWig
  • 277bam
  • 173tsv
  • bed narrowPeak
  • 90tagAlign
  • 2bed bed3+
Organism
  • 266Homo sapiens
Biosample type
  • 127in vitro differentiated cells
  • 79primary cell
  • 40tissue
  • 20cell line
Organ
  • 58pancreas
  • 23epithelium
  • 3heart
  • 2connective tissue
  • 2embryo
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 198AMP
  • 68T1D
Genome assembly (visualization)
  • 183hg19
  • 173GRCh38
Lab
  • 145AMP-T2D consortium
  • 121Kyle Gaulton, UCSD
Audit category:
  • 86inconsistent ontology term
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

266 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
DNAme array
in vitro differentiated cells
cardiomyocytes59
embryonic stem cell5375
induced pluripotent stem cell9
cardiac fibroblast1
cardiomyocytes (cardiac muscle cell)1
primary cell
monocyte52111
CD8-positive, alpha-beta T cell231
naive thymus-derived CD4-positive, alpha-beta T cell21
CD4-positive, alpha-beta T cell2
neutrophil11
tissue
islet of Langerhans36
cardiac atrium1
cardiac ventricle1
pancreas1
thymus1
cell line
EndoC_BH1416
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