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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
7
WGBS
1
single cell RNA-seq
Assay category
98
DNA binding
7
DNA methylation
1
Transcription
Target of assay
77
control
14
histone
14
histone modification
9
narrow histone mark
9
transcription factor
5
broad histone mark
RNA binding protein
1
recombinant protein
Date released
314
May, 2020
306
February, 2021
261
May, 2021
214
August, 2017
212
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
124
October, 2019
91
November, 2017
89
July, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
27
September, 2018
24
November, 2019
23
February, 2018
23
February, 2020
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
November, 2018
14
April, 2019
14
May, 2023
14
November, 2020
13
October, 2018
11
October, 2017
10
December, 2019
9
January, 2019
8
June, 2019
7
August, 2020
7
January, 2018
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
420
bam
357
bigWig
353
fastq
bed narrowPeak
328
bigBed narrowPeak
78
tagAlign
71
bed broadPeak
65
bigBed broadPeak
8
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
2
tar
1
csv
Organism
106
Homo sapiens
Biosample type
69
cell line
33
tissue
4
primary cell
Organ
66
liver
27
brain
5
spleen
4
pancreas
3
blood
3
bodily fluid
2
epithelium
2
vasculature
1
blood vessel
Project
106
AMP
Genome assembly (visualization)
22
hg19
7
GRCh38
Lab
106
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
organ_slims!
adipose tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
106 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
cell line
HepG2
65
1
GM12878
3
tissue
cingulate gyrus
7
layer of hippocampus
6
spleen
3
2
substantia nigra
4
caudate nucleus
3
+ See 4 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
pancreatic cell
1
See all biosamples
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