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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
24
total RNA-seq
16
ATAC-seq
5
Hi-C
4
pCHi-C
Assay category
33
DNA binding
24
Transcription
16
DNA accessibility
5
3D chromatin structure
Target of assay
33
control
histone
29
histone modification
24
narrow histone mark
5
broad histone mark
Date released
684
February, 2021
314
May, 2020
242
May, 2021
178
August, 2017
168
July, 2018
162
May, 2022
146
August, 2021
140
February, 2023
91
July, 2019
82
October, 2019
79
November, 2017
59
March, 2020
59
September, 2020
49
April, 2018
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
22
May, 2019
21
December, 2017
19
April, 2020
16
January, 2021
15
November, 2018
14
November, 2020
10
April, 2019
9
January, 2019
8
January, 2018
7
August, 2020
7
December, 2019
June, 2019
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
5
October, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
57
bam
24
bigWig
bed narrowPeak
11
bigBed narrowPeak
10
tsv
9
tagAlign
8
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
4
hic
3
bedpe bed3+
1
hdf5
1
tar
Organism
82
Homo sapiens
Biosample type
66
tissue
7
cell line
6
in vitro differentiated cells
3
primary cell
Organ
20
limb
19
eye
15
nerve
kidney
10
pancreas
9
brain
9
epithelium
8
blood vessel
8
vasculature
5
artery
3
connective tissue
3
heart
3
vein
1
adipose tissue
1
liver
1
pituitary gland
1
skin of body
Project
82
AMP
Genome assembly (visualization)
18
hg19
11
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bed narrowPeak
month_released!
June, 2019
organ_slims!
kidney
target.investigated_as!
histone
BIOSAMPLE
ASSAY
82 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
14
13
4
tibial nerve
11
4
tibial artery
5
heart
2
1
adipose tissue
1
+ See 11 more…
cell line
Panc1
6
1
in vitro differentiated cells
adipocyte
2
cardiac precursors (cardiac muscle cell)
1
1
cardiomyocytes (cardiac muscle cell)
1
1
primary cell
endothelial cell of umbilical vein
2
1
See all biosamples
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