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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
24
total RNA-seq
16
ATAC-seq
5
Hi-C
4
pCHi-C
Assay category
68
DNA binding
24
Transcription
16
DNA accessibility
5
3D chromatin structure
Target of assay
39
control
29
histone
29
histone modification
24
narrow histone mark
5
broad histone mark
Date released
684
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
168
July, 2018
162
May, 2022
147
August, 2021
140
February, 2023
111
October, 2019
93
November, 2017
91
July, 2019
59
March, 2020
59
September, 2020
49
April, 2018
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
22
December, 2017
22
May, 2019
19
April, 2020
16
January, 2021
15
November, 2018
14
November, 2020
11
October, 2017
10
April, 2019
9
January, 2019
8
January, 2018
7
August, 2020
7
December, 2019
June, 2019
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
233
bam
190
bigWig
bed narrowPeak
74
bigBed narrowPeak
49
tagAlign
11
fastq
10
bed bed3+
10
tsv
9
bed broadPeak
9
bigBed broadPeak
4
hic
3
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
117
Homo sapiens
Biosample type
95
tissue
8
cell line
8
primary cell
6
in vitro differentiated cells
Organ
21
eye
21
limb
17
pancreas
15
nerve
14
epithelium
kidney
13
blood vessel
13
vasculature
11
brain
8
vein
5
artery
4
connective tissue
4
gonad
4
ovary
3
heart
1
adipose tissue
1
liver
1
lymph node
1
pituitary gland
1
skin of body
Project
117
AMP
Genome assembly (visualization)
24
hg19
15
GRCh38
Lab
117
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bed narrowPeak
month_released!
June, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
117 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
27
14
13
4
tibial nerve
11
4
tibial artery
5
heart
2
1
adipose tissue
1
+ See 13 more…
cell line
Panc1
7
1
primary cell
endothelial cell of umbilical vein
7
1
in vitro differentiated cells
adipocyte
2
cardiac precursors (cardiac muscle cell)
1
1
cardiomyocytes (cardiac muscle cell)
1
1
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