Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 68ChIP-seq
  • 30total RNA-seq
  • 16ATAC-seq
  • 5Hi-C
  • 4pCHi-C
  • 2DNase-seq
Assay category
  • 68DNA binding
  • 30Transcription
  • 18DNA accessibility
  • 53D chromatin structure
Target of assay
  • 39control
  • 29histone
  • 29histone modification
  • 24narrow histone mark
  • 5broad histone mark
Date released
  • 692February, 2021
  • 314May, 2020
  • 269August, 2017
  • 266May, 2021
  • 213August, 2021
  • 168July, 2018
  • 162May, 2022
  • 140February, 2023
  • 125October, 2019
  • 101July, 2019
  • 93November, 2017
  • 61March, 2020
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 31October, 2018
  • 27September, 2018
  • 25February, 2020
  • 24November, 2019
  • 23February, 2018
  • 23May, 2019
  • 22December, 2017
  • 19April, 2020
  • 16January, 2021
  • 15April, 2019
  • 15May, 2023
  • 15November, 2018
  • 14November, 2020
  • 11October, 2017
  • 10December, 2019
  • 9January, 2019
  • 8January, 2018
  • 8June, 2019
  • 7August, 2020
  • 6September, 2017
  • 5December, 2018
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 250bam
  • 207bigWig
  • bed narrowPeak
  • 70bigBed narrowPeak
  • 49tagAlign
  • 16tsv
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 8bed bed3+
  • 4hic
  • 3bedpe bed3+
  • 1hdf5
  • 1tagAlign bed3+
  • 1tar
Organism
  • 125Homo sapiens
Biosample type
  • 91tissue
  • 15cell line
  • 13primary cell
  • 6in vitro differentiated cells
Organ
  • 21eye
  • 21limb
  • 15nerve
  • 14epithelium
  • 14kidney
  • 13blood vessel
  • 13vasculature
  • 11brain
  • 11pancreas
  • 8vein
  • 5artery
  • 4connective tissue
  • 4gonad
  • 4ovary
  • 3heart
  • 1adipose tissue
  • 1liver
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 125AMP
Genome assembly (visualization)
  • 28hg19
  • 19GRCh38
Lab
  • 125AMP-T2D consortium
Audit category:
  • 10inconsistent ontology term
  • 1audit script error
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

125 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
DNase-seq
tissue
islet of Langerhans2114134
tibial nerve114
tibial artery5
heart21
kidney2
cell line
Panc171
RCC 7860 HIF1a re-expression11
RCC 7860 HIF2a over-expression11
RCC 7860 vector11
glomerular visceral epithelial cell1
primary cell
endothelial cell of umbilical vein71
kidney glomerular epithelial cell11
kidney tubule cell11
epithelial cell of proximal tubule1
in vitro differentiated cells
adipocyte2
cardiac precursors (cardiac muscle cell)11
cardiomyocytes (cardiac muscle cell)11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego