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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398total RNA-seq
  • 66ChIP-seq
  • 6WGBS
  • 3small RNA-seq
  • 2ATAC-seq
  • 2pCHi-C
  • 1RNA microarray
Assay category
  • 401Transcription
  • 66DNA binding
  • 6DNA methylation
  • 2DNA accessibility
Target of assay
  • 30histone
  • 30histone modification
  • 24control
  • 20broad histone mark
  • 12transcription factor
  • 10narrow histone mark
Date released
  • 386February, 2021
  • 54August, 2017
  • 18October, 2018
  • 12July, 2019
  • 2February, 2020
  • 1August, 2018
  • 1August, 2021
  • 1January, 2018
  • 1March, 2020
  • 1May, 2023
  • 1October, 2019
Available data
  • 442bam
  • 425bigWig
  • 401tsv
  • 44fastq
  • bed narrowPeak
  • 10bigBed narrowPeak
  • 8tagAlign
  • 6bed bed3+
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 477Homo sapiens
Biosample type
  • 475tissue
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 732pancreas
  • 609connective tissue
  • 478adipose tissue
  • 373epithelium
  • 350liver
  • 202heart
  • 171kidney
  • 151bone element
  • 103vasculature
  • 101blood vessel
  • 83brain
  • 67artery
  • 36musculature of body
  • 30limb
  • 28eye
  • 23embryo
  • 20lung
  • 16nerve
  • 15blood
  • 15bodily fluid
  • 11spleen
  • 9vein
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 478AMP
Genome assembly (visualization)
  • 413GRCh38
  • 413hg19
Lab
  • 478AMP-T2D consortium
Audit category:
  • 12missing controlled_by
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

478 results

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Clear Filters
total RNA-seq
ChIP-seq
WGBS
small RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
adipose tissue3821321
subcutaneous abdominal adipose tissue353
subcutaneous adipose tissue71011
omental fat pad581
white adipose tissue12
primary cell
mesenchymal stem cell of adipose11
in vitro differentiated cells
white fat cell1
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