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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
11
single cell RNA-seq
10
snATAC-seq
9
ChIP-seq
1
ATAC-seq
1
pCHi-C
Assay category
67
Transcription
11
DNA accessibility
9
DNA binding
Target of assay
9
control
Date released
54
February, 2021
19
April, 2020
6
October, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
May, 2019
1
March, 2020
Available data
103
bam
86
bigWig
bed narrowPeak
59
tsv
25
bigBed narrowPeak
7
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
87
Homo sapiens
Biosample type
54
cell line
32
tissue
2
primary cell
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
19
LungMap
Genome assembly (visualization)
54
GRCh38
54
hg19
Lab
69
AMP-T2D consortium
19
Xin Sun, UCSD
files.file_type!
bed narrowPeak
organ_slims!
esophagus
BIOSAMPLE
ASSAY
88 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
ATAC-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
2
tissue
lung
9
10
1
tibial artery
1
5
coronary artery
1
2
pulmonary artery
2
islet of Langerhans
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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