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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
Hi-C
2
RRBS
Assay category
27
DNA binding
24
Transcription
4
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
30
control
histone
24
histone modification
15
narrow histone mark
9
broad histone mark
Date released
16
July, 2019
14
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
3
March, 2020
3
May, 2019
1
February, 2023
Available data
74
bam
52
bigWig
bed narrowPeak
34
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
27
tsv
19
tagAlign
9
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
62
Homo sapiens
Biosample type
54
tissue
8
primary cell
Organ
708
pancreas
566
connective tissue
448
adipose tissue
368
epithelium
328
liver
202
heart
171
kidney
151
bone element
98
vasculature
blood vessel
67
artery
63
brain
30
musculature of body
29
limb
26
eye
22
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
8
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
Genome assembly (visualization)
19
hg19
14
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed narrowPeak
organ_slims!
blood vessel
target.investigated_as!
histone
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
Hi-C
RRBS
tissue
brain
3
1
1
1
cerebellum (Hemisphere)
2
1
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
frontal cortex
2
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
brain pericyte
1
See all biosamples
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