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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 48ChIP-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
Assay category
  • 48DNA binding
  • 24Transcription
  • 4DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 31control
  • 20histone
  • 20histone modification
  • 11narrow histone mark
  • 9broad histone mark
Date released
  • 27November, 2017
  • 17July, 2019
  • 12February, 2020
  • 11October, 2019
  • 10October, 2017
  • 3May, 2019
  • 2March, 2020
  • 1February, 2023
Available data
  • 243bam
  • 222bigWig
  • bed narrowPeak
  • 127bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • 21fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 83Homo sapiens
Biosample type
  • 73tissue
  • 10primary cell
Organ
  • 732pancreas
  • 609connective tissue
  • 478adipose tissue
  • 373epithelium
  • 350liver
  • 202heart
  • 171kidney
  • 151bone element
  • 103vasculature
  • 101blood vessel
  • 83brain
  • 67artery
  • 36musculature of body
  • 30limb
  • 28eye
  • 23embryo
  • 20lung
  • 16nerve
  • 15blood
  • 15bodily fluid
  • 11spleen
  • 9vein
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 83AMP
Genome assembly (visualization)
  • 23hg19
  • 16GRCh38
Lab
  • 83AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 1missing controlled_by
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

83 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain9111
cingulate gyrus7
layer of hippocampus6
cerebellum (Hemisphere)2111
substantia nigra41
primary cell
astrocyte of the cerebellum11
brain microvascular endothelial cell11
cerebellar granule cell2
choroid plexus epithelial cell11
Purkinje cell1
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