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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 95ChIP-seq
  • 17ATAC-seq
  • 6WGBS
  • 5pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 481Transcription
  • 95DNA binding
  • 17DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Target of assay
  • 43histone
  • 43histone modification
  • 35control
  • 28broad histone mark
  • 17transcription factor
  • 15narrow histone mark
Date released
  • 454February, 2021
  • 79August, 2017
  • 18July, 2019
  • 18October, 2018
  • 13February, 2023
  • 4November, 2020
  • 4October, 2019
  • 3August, 2021
  • 3June, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2May, 2021
  • 1August, 2018
  • 1January, 2018
  • 1May, 2023
Available data
  • 593bam
  • 570bigWig
  • 478tsv
  • 101fastq
  • bed narrowPeak
  • 28bigBed narrowPeak
  • 27bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 608Homo sapiens
Biosample type
  • 534tissue
  • 52in vitro differentiated cells
  • 22primary cell
  • 1stem cell
Organ
  • 732pancreas
  • 609connective tissue
  • 478adipose tissue
  • 373epithelium
  • 350liver
  • 202heart
  • 171kidney
  • 151bone element
  • 103vasculature
  • 101blood vessel
  • 83brain
  • 67artery
  • 36musculature of body
  • 30limb
  • 28eye
  • 23embryo
  • 20lung
  • 16nerve
  • 15blood
  • 15bodily fluid
  • 11spleen
  • 9vein
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 608AMP
  • 1T1D
Genome assembly (visualization)
  • 515hg19
  • 495GRCh38
Lab
  • 606AMP-T2D consortium
  • 2Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 8inconsistent ontology term
Audit category:
  • 17missing controlled_by
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

609 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue3821231
bone tissue58
subcutaneous abdominal adipose tissue353
subcutaneous adipose tissue71011
omental fat pad581
in vitro differentiated cells
adipocyte52571
chondrocyte5
immature adipocyte22
preadipocyte11
cardiac fibroblast1
primary cell
osteoblast51
pancreatic stellate cell4
cardiac fibroblast21
mesenchymal stem cell of adipose11
adult endothelial progenitor cell1
stem cell
mesenchymal stem cell1
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