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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
total RNA-seq
5
pCHi-C
2
ATAC-seq
1
ChIP-seq
1
RRBS
Assay category
19
Transcription
2
DNA accessibility
1
DNA binding
1
DNA methylation
Target of assay
2
histone
histone modification
2
narrow histone mark
1
control
Date released
20
October, 2019
4
February, 2023
1
February, 2020
1
July, 2019
1
June, 2019
1
March, 2020
Available data
bed narrowPeak
6
bam
6
tsv
5
bigBed narrowPeak
5
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
28
Homo sapiens
Biosample type
26
tissue
2
primary cell
Organ
708
pancreas
566
connective tissue
448
adipose tissue
368
epithelium
328
liver
202
heart
171
kidney
151
bone element
98
vasculature
96
blood vessel
67
artery
63
brain
30
musculature of body
29
limb
26
eye
22
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
8
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
1
hg19
Lab
28
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed narrowPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
28 results
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Clear Filters
total RNA-seq
pCHi-C
ATAC-seq
ChIP-seq
RRBS
tissue
islet of Langerhans
14
4
2
retina
3
pigmented layer of retina
2
gastric (mucosa of stomach)
1
primary cell
retinal pigment epithelial cell
1
1
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