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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 64single cell RNA-seq
  • 60total RNA-seq
  • 13ChIP-seq
  • 11ATAC-seq
  • 6snATAC-seq
  • 4RRBS
  • 3snDrop-seq
  • 2DNase-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1Hi-C
  • 1small RNA-seq
Assay category
  • 125Transcription
  • 19DNA accessibility
  • 13DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 12control
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 66August, 2021
  • 47September, 2023
  • 14May, 2023
  • 14October, 2019
  • 10July, 2019
  • 8February, 2021
  • 5April, 2019
  • 3December, 2019
  • 2March, 2020
  • 1June, 2019
  • 1May, 2019
Available data
  • bed narrowPeak
  • 144bam
  • 131bigWig
  • 104bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • 24tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 171Homo sapiens
Biosample type
  • 146tissue
  • 14primary cell
  • 11cell line
Organ
  • 732pancreas
  • 609connective tissue
  • 478adipose tissue
  • 373epithelium
  • 350liver
  • 202heart
  • 171kidney
  • 151bone element
  • 103vasculature
  • 101blood vessel
  • 83brain
  • 67artery
  • 36musculature of body
  • 30limb
  • 28eye
  • 23embryo
  • 20lung
  • 16nerve
  • 15blood
  • 15bodily fluid
  • 11spleen
  • 9vein
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 124AMP
  • 47KPMP
Genome assembly (visualization)
  • 23GRCh38
  • 17hg19
Lab
  • 78Katalin Susztak, Upenn
  • 47KPMP
  • 44AMP-T2D consortium
  • 2Bing Ren, UCSD
Audit category:
  • 11inconsistent ontology term
  • 7audit script error
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

171 results

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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
small RNA-seq
tissue
kidney6449711611
metanephros11
kidney (Cortex-Medulla)1
kidney (cortex)1
kidney (medulla)1
primary cell
epithelial cell of proximal tubule121
kidney epithelial cell111
kidney glomerular epithelial cell11
kidney tubule cell11
renal cortical epithelial cell11
cell line
RCC 7860 vector111
HEK293T2
RCC 7860 HIF1a re-expression11
RCC 7860 HIF2a over-expression11
RCC 7860 VHL1
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