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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
7
total RNA-seq
4
Hi-C
3
pCHi-C
1
WGBS
Assay category
22
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
17
control
5
histone
5
histone modification
5
narrow histone mark
Date released
25
October, 2019
5
July, 2019
3
February, 2020
2
March, 2020
1
May, 2019
1
May, 2021
Available data
114
bam
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
9
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
37
Homo sapiens
Biosample type
37
tissue
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
1
T1D
Genome assembly (visualization)
5
GRCh38
4
hg19
Lab
36
AMP-T2D consortium
1
Kyle Gaulton, UCSD
files.file_type!
bed narrowPeak
organ_slims!
skin of body
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
total RNA-seq
Hi-C
pCHi-C
WGBS
tissue
tibial nerve
11
5
tibial artery
5
1
gastrocnemius medialis
1
4
islet of Langerhans
5
muscle of leg
1
1
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