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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
11
total RNA-seq
4
ATAC-seq
4
Hi-C
1
WGBS
Assay category
18
DNA binding
11
Transcription
4
3D chromatin structure
4
DNA accessibility
1
DNA methylation
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
21
October, 2019
8
February, 2023
5
July, 2019
3
February, 2020
1
May, 2019
Available data
116
bam
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
4
bed bed3
4
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
38
Homo sapiens
Biosample type
38
tissue
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
8
hg19
5
GRCh38
Lab
38
AMP-T2D consortium
files.file_type!
bed narrowPeak
organ_slims!
brain
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
tissue
tibial nerve
11
5
tibial artery
5
1
gastrocnemius medialis
1
4
acetabular part of hip bone
1
1
ilium
1
1
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