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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
130
ChIP-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
130
DNA binding
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
108
control
22
histone
22
histone modification
13
broad histone mark
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
65
November, 2017
28
August, 2017
20
May, 2022
18
August, 2021
13
December, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
November, 2018
1
December, 2018
1
February, 2020
1
October, 2019
Available data
631
bam
570
bigWig
446
fastq
bed narrowPeak
344
bigBed narrowPeak
174
tsv
57
bed broadPeak
57
bigBed broadPeak
46
tagAlign
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
341
Homo sapiens
Biosample type
240
tissue
92
cell line
8
primary cell
1
in vitro differentiated cells
Organ
718
pancreas
594
connective tissue
468
adipose tissue
372
epithelium
341
liver
202
heart
171
kidney
151
bone element
102
vasculature
100
blood vessel
72
brain
67
artery
musculature of body
29
limb
26
eye
22
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
8
skeleton
8
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
341
AMP
Genome assembly (visualization)
187
hg19
164
GRCh38
Lab
304
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
bed narrowPeak
organ_slims!
musculature of body
spinal cord
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
341 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
55
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
14
70
1
2
2
2
1
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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