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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 189total RNA-seq
  • 139ChIP-seq
  • 5WGBS
  • 4Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1DNase-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 193Transcription
  • 139DNA binding
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA accessibility
  • 1DNA sequencing
Target of assay
  • 108control
  • 22histone
  • 22histone modification
  • 13broad histone mark
  • 9narrow histone mark
  • 9transcription factor
  • 2RNA binding protein
  • 1recombinant protein
Date released
  • 167May, 2020
  • 66November, 2017
  • 36August, 2017
  • 20May, 2022
  • 18August, 2021
  • 13December, 2017
  • 10July, 2019
  • 5December, 2019
  • 5January, 2019
  • 3March, 2020
  • 2February, 2021
  • 2November, 2018
  • 1December, 2018
  • 1February, 2020
  • 1October, 2019
Available data
  • 681bam
  • 622bigWig
  • 465fastq
  • bed narrowPeak
  • 358bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 350Homo sapiens
Biosample type
  • 248tissue
  • 93cell line
  • 8primary cell
  • 1in vitro differentiated cells
Organ
  • 732pancreas
  • 609connective tissue
  • 478adipose tissue
  • 373epithelium
  • 350liver
  • 202heart
  • 171kidney
  • 151bone element
  • 103vasculature
  • 101blood vessel
  • 83brain
  • 67artery
  • 36musculature of body
  • 30limb
  • 28eye
  • 23embryo
  • 20lung
  • 16nerve
  • 15blood
  • 15bodily fluid
  • 11spleen
  • 9vein
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 350AMP
Genome assembly (visualization)
  • 188hg19
  • 164GRCh38
Lab
  • 313AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
Audit category:
  • 1missing controlled_by
Audit category:
  • 2inconsistent control read length
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

350 results

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Clear Filters
total RNA-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver16763311111
right lobe of liver33121
cell line
HepG2147112221
primary cell
hepatocyte511
endothelial cell of hepatic sinusoid1
in vitro differentiated cells
hepatocyte1
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