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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
total RNA-seq
6
ChIP-seq
6
Hi-C
6
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
10
Transcription
7
DNA methylation
6
3D chromatin structure
6
DNA binding
2
DNA accessibility
Target of assay
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
12
July, 2019
10
August, 2017
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
69
bigWig
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
10
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
32
Homo sapiens
Biosample type
28
tissue
4
primary cell
Organ
679
pancreas
574
connective tissue
454
adipose tissue
343
epithelium
242
liver
182
heart
159
kidney
151
bone element
81
vasculature
80
blood vessel
58
artery
52
brain
30
musculature of body
27
eye
20
lung
16
embryo
13
limb
9
blood
9
bodily fluid
8
skeleton
7
vein
5
gonad
5
nerve
5
ovary
3
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
32
AMP
Genome assembly (visualization)
15
hg19
8
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed narrowPeak
organ_slims!
urinary bladder
target.investigated_as!
control
BIOSAMPLE
ASSAY
32 results
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total RNA-seq
ChIP-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
1
6
4
1
1
1
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
left ventricle myocardium
1
muscle of leg
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
1
1
pericardium fibroblast
1
skeletal muscle cell
1
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