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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 12ChIP-seq
  • 6Hi-C
  • 6total RNA-seq
  • 5RRBS
  • 2small RNA-seq
  • 1ATAC-seq
  • 1WGBS
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1snATAC-seq
Assay category
  • 12DNA binding
  • 9Transcription
  • 63D chromatin structure
  • 6DNA methylation
  • 2DNA accessibility
Target of assay
  • 6control
  • 6histone
  • 6histone modification
  • 4broad histone mark
  • 2narrow histone mark
Date released
  • 13August, 2017
  • 10July, 2019
  • 5March, 2020
  • 2February, 2020
  • 2June, 2019
  • 2May, 2022
  • 1January, 2018
  • 1May, 2019
Available data
  • 68bigWig
  • bed narrowPeak
  • 57bam
  • 47bigBed narrowPeak
  • 46bed broadPeak
  • 34bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bedpe bed3+
  • 2fastq
  • 2hic
  • 1txt
Organism
  • 36Homo sapiens
Biosample type
  • 31tissue
  • 5primary cell
Organ
  • 732pancreas
  • 609connective tissue
  • 478adipose tissue
  • 373epithelium
  • 350liver
  • 202heart
  • 171kidney
  • 151bone element
  • 103vasculature
  • 101blood vessel
  • 83brain
  • 67artery
  • 36musculature of body
  • 30limb
  • 28eye
  • 23embryo
  • 20lung
  • 16nerve
  • 15blood
  • 15bodily fluid
  • 11spleen
  • 9vein
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 36AMP
Genome assembly (visualization)
  • 13hg19
  • 7GRCh38
Lab
  • 36AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

36 results

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Clear Filters
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue9141111
gastrocnemius medialis41
psoas muscle221
muscle of leg11
left ventricle myocardium1
primary cell
skeletal muscle satellite cell111
skeletal muscle cell11
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