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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 397total RNA-seq
  • 88ATAC-seq
  • 80single cell RNA-seq
  • 78ChIP-seq
  • 51WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 2Capture-C
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 479Transcription
  • 99DNA accessibility
  • 78DNA binding
  • 53DNA methylation
  • 93D chromatin structure
Target of assay
  • 53control
  • 24histone
  • 24histone modification
  • 14narrow histone mark
  • 10broad histone mark
  • 6transcription factor
  • 5nucleotide modification
  • 1RNA binding protein
Date released
  • 157July, 2018
  • 139August, 2017
  • 86May, 2022
  • 58May, 2021
  • 56February, 2023
  • 39April, 2018
  • 32February, 2021
  • 26September, 2018
  • 24November, 2019
  • 19September, 2020
  • 13October, 2018
  • 11March, 2020
  • 11October, 2019
  • 10November, 2020
  • 8January, 2021
  • 7August, 2020
  • 6July, 2019
  • 6September, 2017
  • 5March, 2019
  • 4August, 2021
  • 4November, 2018
  • 3August, 2018
  • 3October, 2022
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
  • 1May, 2019
  • 1October, 2017
Available data
  • 689bam
  • 623bigWig
  • 471fastq
  • 417tsv
  • bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 730Homo sapiens
Biosample type
  • 382tissue
  • 278primary cell
  • 71cell line
  • 1in vitro differentiated cells
Organ
  • 732pancreas
  • 609connective tissue
  • 478adipose tissue
  • 373epithelium
  • 350liver
  • 202heart
  • 171kidney
  • 151bone element
  • 103vasculature
  • 101blood vessel
  • 83brain
  • 67artery
  • 37musculature of body
  • 30limb
  • 28eye
  • 23embryo
  • 20lung
  • 16nerve
  • 15blood
  • 15bodily fluid
  • 11spleen
  • 9vein
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 550AMP
  • 152HPAP
  • 30T1D
Genome assembly (visualization)
  • 447GRCh38
  • 446hg19
Lab
  • 529AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 33Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 67inconsistent ontology term
  • 4audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

732 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans278216307431
body of pancreas3922
pancreas2324111
endocrine pancreas2
primary cell
pancreatic alpha cell5229126311
pancreatic beta cell2116126161
pancreatic acinar cell44121
pancreatic ductal cell410
pancreatic endocrine cell12
pancreatic delta cell11
pancreatic polypeptide-secreting cell9
pancreatic stellate cell4
co-expressing pancreatic endocrine cell2
unclassified pancreatic endocrine cell2
cell line
EndoC_BH1331826121
Panc171
in vitro differentiated cells
pancreatic PP cell1
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