Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 61total RNA-seq
  • 27ChIP-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1RRBS
  • 1pCHi-C
Assay category
  • 67Transcription
  • 27DNA binding
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 22control
  • 5histone
  • 5histone modification
  • 4broad histone mark
  • 1narrow histone mark
Date released
  • 54February, 2021
  • 13October, 2019
  • 11May, 2019
  • 10July, 2019
  • 6August, 2021
  • 4March, 2020
  • 3February, 2020
  • 2November, 2017
Available data
  • 185bam
  • 155bigWig
  • bed narrowPeak
  • 83bigBed narrowPeak
  • 68tsv
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 103Homo sapiens
Biosample type
  • 54cell line
  • 33tissue
  • 16primary cell
Organ
  • 732pancreas
  • 609connective tissue
  • 478adipose tissue
  • 373epithelium
  • 350liver
  • 202heart
  • 171kidney
  • 151bone element
  • 103vasculature
  • 101blood vessel
  • 83brain
  • 67artery
  • 36musculature of body
  • 30limb
  • 28eye
  • 23embryo
  • 20lung
  • 16nerve
  • 15blood
  • 15bodily fluid
  • 11spleen
  • 9vein
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 103AMP
Genome assembly (visualization)
  • 68hg19
  • 59GRCh38
Lab
  • 103AMP-T2D consortium
Audit category:
  • 1audit script error
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

103 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
Hi-C
WGBS
RRBS
pCHi-C
cell line
smooth muscle cell of the coronary artery522
tissue
aorta124121
thoracic aorta24
tibial artery15
ascending aorta23
coronary artery12
primary cell
endothelial cell of umbilical vein72
brain microvascular endothelial cell11
choroid plexus epithelial cell11
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego