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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 546ChIP-seq
  • 253ATAC-seq
  • 84snATAC-seq
  • 75WGBS
  • 68total RNA-seq
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3single cell RNA-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1RNA microarray
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 546DNA binding
  • 340DNA accessibility
  • 97DNA methylation
  • 75Transcription
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 338control
  • 166histone
  • 166histone modification
  • 85narrow histone mark
  • 81broad histone mark
  • 45transcription factor
  • 9RNA binding protein
  • 1recombinant protein
Date released
  • 180August, 2017
  • 169May, 2020
  • 102May, 2022
  • 99October, 2019
  • 93November, 2017
  • 84May, 2021
  • 52July, 2019
  • 46February, 2023
  • 46March, 2020
  • 43February, 2021
  • 29October, 2018
  • 28August, 2021
  • 23May, 2019
  • 22December, 2017
  • 16January, 2021
  • 15April, 2019
  • 14November, 2018
  • 11May, 2023
  • 11October, 2017
  • 10April, 2020
  • 9January, 2019
  • 8February, 2018
  • 8January, 2018
  • 8June, 2019
  • 7August, 2020
  • 6September, 2017
  • 5December, 2018
  • 5March, 2019
  • 5March, 2023
  • 4November, 2019
  • 4October, 2022
  • 3September, 2020
  • 1August, 2018
  • 1August, 2022
Available data
  • 2057bam
  • 1838bigWig
  • bed narrowPeak
  • 1042bigBed narrowPeak
  • 992fastq
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 5txt
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1158Homo sapiens
Biosample type
  • 477tissue
  • 419primary cell
  • 139cell line
  • 124in vitro differentiated cells
  • 8stem cell
Organ
  • 243pancreas
  • 170epithelium
  • 160liver
  • 134connective tissue
  • 78adipose tissue
  • 62brain
  • 43kidney
  • 40heart
  • 38vasculature
  • 36blood vessel
  • 28musculature of body
  • 27limb
  • 15blood
  • 15bodily fluid
  • 15nerve
  • 11artery
  • 11lung
  • 11spleen
  • 9embryo
  • 9eye
  • 9vein
  • 5bone element
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 909AMP
  • 147HPAP
  • 96T1D
  • 10LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 283hg19
  • 165GRCh38
  • 5hg18
Lab
  • 830AMP-T2D consortium
  • 147Klaus Kaestner, Upenn
  • 141Kyle Gaulton, UCSD
  • 18Katalin Susztak, Upenn
  • 10Xin Sun, UCSD
  • 9Bing Ren, UCSD
  • 4Anna Gloyn, Oxford
  • 3Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 64inconsistent ontology term
  • 33audit script error
Audit category:
  • 41missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bed narrowPeak
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

1167 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
single cell RNA-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
MPRA
RNA microarray
...and 3 more
tissue
islet of Langerhans51317431
liver633111
subcutaneous abdominal adipose tissue353
kidney711611
skeletal muscle tissue9114
primary cell
pancreatic alpha cell629311
Langerhans cell48
pancreatic beta cell616161
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
cell line
HepG2711522
EndoC_BH121812321
Panc171
GM1287861
EndoC-BH1
in vitro differentiated cells
embryonic stem cell3851
adipocyte2571
neural progenitor cell8
pancreatic endoderm61
chondrocyte5
stem cell
SB Ad3.111
hESC11
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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