Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 241total RNA-seq
  • 152ATAC-seq
  • 121ChIP-seq
  • 95single cell RNA-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2DNase-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 347Transcription
  • 166DNA accessibility
  • 121DNA binding
  • 28DNA methylation
  • 193D chromatin structure
Target of assay
  • 77control
  • 30transcription factor
  • 22histone
  • 22histone modification
  • 14broad histone mark
  • 9RNA binding protein
  • 8narrow histone mark
  • 5nucleotide modification
Date released
  • 144May, 2020
  • 101May, 2021
  • 58July, 2019
  • 50February, 2023
  • 45July, 2018
  • 45March, 2020
  • 40November, 2017
  • 39April, 2018
  • 39February, 2021
  • 37October, 2019
  • 36August, 2021
  • 25February, 2020
  • 21August, 2017
  • 10November, 2020
  • 7December, 2017
  • 7December, 2019
  • 7October, 2017
  • 6January, 2019
  • 5January, 2021
  • 5March, 2019
  • 4November, 2018
  • 3August, 2018
  • 3October, 2022
  • 2June, 2019
  • 2May, 2019
  • 2May, 2022
  • 2September, 2017
  • 1April, 2019
  • 1December, 2018
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1159bam
  • 1078bigWig
  • bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 751Homo sapiens
Biosample type
  • 349primary cell
  • 183tissue
  • 121in vitro differentiated cells
  • 96cell line
  • 2stem cell
Organ
  • 152pancreas
  • 114epithelium
  • 70liver
  • 46connective tissue
  • 39brain
  • 32kidney
  • 22heart
  • 18vasculature
  • 17blood vessel
  • 15adipose tissue
  • 13musculature of body
  • 11embryo
  • 9bone element
  • 8skeleton
  • 7vein
  • 6blood
  • 6bodily fluid
  • 5artery
  • 4limb
  • 2eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 630AMP
  • 111T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 448hg19
  • 322GRCh38
Lab
  • 585AMP-T2D consortium
  • 127Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 8Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 96inconsistent ontology term
  • 6audit script error
Audit category:
  • 13missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bed narrowPeak
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

751 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
snDrop-seq
DNAme array
primary cell
monocyte262111
naive thymus-derived CD4-positive, alpha-beta T cell12221
CD4-positive, alpha-beta memory T cell22
pancreatic alpha cell1116
pancreatic beta cell1111
tissue
islet of Langerhans10181162134
brain1161
liver32111
heart3111
kidney114
in vitro differentiated cells
embryonic stem cell54111
cardiac precursors (cardiac muscle cell)191
neural progenitor cell78
cardiomyocytes12
adipocyte1711
cell line
HepG25402112
EndoC_BH12263
H1-hESC8
Panc151
GM128784
stem cell
hESC1
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego