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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • 90ATAC-seq
  • 89single cell RNA-seq
  • 51ChIP-seq
  • 28pCHi-C
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 2Capture-C
  • 2DNase-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 290Transcription
  • 97DNA accessibility
  • 51DNA binding
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 22transcription factor
  • 17control
  • 14histone
  • 14histone modification
  • 8broad histone mark
  • 7RNA binding protein
  • 6narrow histone mark
  • 2nucleotide modification
Date released
  • 88May, 2020
  • 88May, 2021
  • 46February, 2023
  • 44July, 2018
  • 39April, 2018
  • 34July, 2019
  • 30March, 2020
  • 25February, 2020
  • 20August, 2021
  • 15August, 2017
  • 10February, 2021
  • 10October, 2019
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2September, 2017
  • 1April, 2019
  • 1December, 2017
  • 1February, 2018
  • 1June, 2018
  • 1June, 2019
  • 1March, 2023
  • 1September, 2018
Available data
  • 483bam
  • 467bigWig
  • 302tsv
  • bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 484Homo sapiens
Biosample type
  • 243primary cell
  • 159tissue
  • 81in vitro differentiated cells
  • 1stem cell
Organ
  • 124pancreas
  • 76epithelium
  • 39connective tissue
  • 30brain
  • 18heart
  • 15adipose tissue
  • 13kidney
  • 9musculature of body
  • 8bone element
  • 8liver
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1eye
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 390AMP
  • 90T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 332hg19
  • 260GRCh38
Lab
  • 358AMP-T2D consortium
  • 108Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 44inconsistent ontology term
  • 4audit script error
Audit category:
  • 13missing controlled_by
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

484 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
Capture-C
DNase-seq
snDrop-seq
DNAme array
primary cell
monocyte26211
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans1018611224
brain16
liver2121
heart2111
skeletal muscle tissue1111
in vitro differentiated cells
embryonic stem cell54111
neural progenitor cell78
cardiomyocytes12
induced pluripotent stem cell9
adipocyte1311
stem cell
mesenchymal stem cell1
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