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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 70ChIP-seq
  • 62ATAC-seq
  • 51total RNA-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
Assay category
  • 70DNA binding
  • 69DNA accessibility
  • 57Transcription
  • 27DNA methylation
  • 103D chromatin structure
Target of assay
  • 60control
  • 8histone
  • 8histone modification
  • 8transcription factor
  • 6broad histone mark
  • 3nucleotide modification
  • 2RNA binding protein
  • 2narrow histone mark
Date released
  • 56May, 2020
  • 40November, 2017
  • 29February, 2021
  • 27October, 2019
  • 24July, 2019
  • 16August, 2021
  • 15March, 2020
  • 13May, 2021
  • 7December, 2019
  • 6August, 2017
  • 6December, 2017
  • 6January, 2019
  • 6November, 2020
  • 4February, 2023
  • 4November, 2018
  • 3January, 2021
  • 2May, 2019
  • 1December, 2018
  • 1July, 2018
  • 1June, 2019
Available data
  • 676bam
  • 611bigWig
  • bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 267Homo sapiens
Biosample type
  • 106primary cell
  • 96cell line
  • 40in vitro differentiated cells
  • 24tissue
  • 1stem cell
Organ
  • 62liver
  • 38epithelium
  • 28pancreas
  • 19kidney
  • 11vasculature
  • 10blood vessel
  • 9brain
  • 9embryo
  • 7connective tissue
  • 6vein
  • 4blood
  • 4bodily fluid
  • 4heart
  • 4musculature of body
  • 1artery
  • 1bone element
  • 1bone marrow
  • 1eye
  • 1limb
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 240AMP
  • 21T1D
  • 6HPAP
Genome assembly (visualization)
  • 116hg19
  • 62GRCh38
Lab
  • 227AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
  • 1Struan F.A. Grant, CHOP
Audit category:
  • 52inconsistent ontology term
  • 2audit script error
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

267 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
macrophage11
endothelial cell of umbilical vein6
hepatocyte51
cell line
HepG24052112
EndoC_BH12263
H1-hESC8
Panc151
GM128784
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)191
cardiomyocytes (cardiac muscle cell)2122
adipocyte4
lymphocyte of B lineage (iPSC)111
Posterior foregut1
tissue
kidney14
pancreas12
brain11
islet of Langerhans11
liver11
stem cell
hESC1
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