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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 85ChIP-seq
Assay category
  • 85DNA binding
Target of assay
  • 343control
  • 166histone
  • 166histone modification
  • 85narrow histone mark
  • 81broad histone mark
  • 45transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
  • 1recombinant protein
Date released
  • 38August, 2017
  • 24October, 2019
  • 12May, 2021
  • 9November, 2017
  • 1December, 2017
  • 1October, 2017
Available data
  • 440bigWig
  • bed narrowPeak
  • 405bam
  • 174tagAlign
  • 149bigBed narrowPeak
  • 110fastq
  • 29bed broadPeak
  • 14bigBed broadPeak
  • 13bed bed3+
  • 1tagAlign bed3+
Organism
  • 85Homo sapiens
Biosample type
  • 58tissue
  • 15in vitro differentiated cells
  • 11primary cell
  • 1cell line
Organ
  • 15connective tissue
  • 14pancreas
  • 11brain
  • 10adipose tissue
  • 9liver
  • 4gonad
  • 4ovary
  • 2eye
  • 2musculature of body
  • 1blood vessel
  • 1embryo
  • 1epithelium
  • 1limb
  • 1lymph node
  • 1vasculature
  • 1vein
Project
  • 85AMP
Genome assembly (visualization)
  • 13hg19
  • 12GRCh38
Lab
  • 75AMP-T2D consortium
  • 10Kyle Gaulton, UCSD
Audit category:
  • 11missing controlled_by
Audit category:
  • 1inconsistent control read length
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

85 results

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Clear Filters
ChIP-seq
tissue
islet of Langerhans27
subcutaneous abdominal adipose tissue10
liver8
cingulate gyrus3
skeletal muscle tissue2
in vitro differentiated cells
embryonic stem cell10
adipocyte4
pancreatic endoderm1
primary cell
pancreatic endocrine cell8
endothelial cell of umbilical vein1
monocyte1
naive thymus-derived CD4-positive, alpha-beta T cell1
cell line
HepG21
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