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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
28
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
2
pCHi-C
1
WGBS
Assay category
43
DNA accessibility
28
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
25
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
4
December, 2018
4
March, 2020
3
February, 2020
November, 2018
1
January, 2019
1
July, 2019
Available data
195
bam
bigWig
139
bed narrowPeak
88
bigBed narrowPeak
69
tsv
18
fastq
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
86
Homo sapiens
Biosample type
69
tissue
10
cell line
7
primary cell
Organ
322
pancreas
223
epithelium
223
kidney
169
heart
168
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
12
nerve
11
blood
11
bodily fluid
8
embryo
7
vein
6
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
86
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bedpe
bigWig
month_released!
November, 2018
BIOSAMPLE
ASSAY
86 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
WGBS
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
spleen
5
1
tibial artery
5
1
ascending aorta
3
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
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