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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
187
DNase-seq
100
ATAC-seq
73
ChIP-seq
1
pCHi-C
Assay category
287
DNA accessibility
190
Transcription
73
DNA binding
Target of assay
46
histone
46
histone modification
38
narrow histone mark
31
control
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
258
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
104
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
493
bam
462
bigWig
229
bed narrowPeak
202
bigBed narrowPeak
189
tsv
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
50
tagAlign
Organism
551
Homo sapiens
Biosample type
356
tissue
194
primary cell
1
cell line
Organ
196
liver
81
kidney
39
musculature of body
35
heart
32
limb
30
brain
20
epithelium
18
ureter
14
connective tissue
7
eye
7
vasculature
5
blood vessel
4
pancreas
2
artery
1
adipose tissue
Project
506
AMP
45
T1D
Genome assembly (visualization)
439
hg19
409
GRCh38
Lab
506
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
26
inconsistent ontology term
files.file_type!
bedpe
hdf5
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
551 results
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Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
cardiac fibroblast
3
5
B cell
2
2
+ See 46 more…
cell line
HepG2
1
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