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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
85
single cell RNA-seq
50
ATAC-seq
48
snATAC-seq
47
WGBS
4
Hi-C
3
STARR-seq
Assay category
178
Transcription
98
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
7
August, 2020
5
August, 2021
3
October, 2022
1
March, 2019
Available data
169
fastq
153
zippedFastqFolder
10
bigWig
7
tsv
4
bedpe bed3+
4
hic
3
cool
bedpe
Organism
330
Homo sapiens
Biosample type
324
primary cell
3
cell line
3
tissue
Organ
155
pancreas
152
epithelium
liver
2
kidney
Project
324
HPAP
6
AMP
Genome assembly (visualization)
11
GRCh38
4
hg19
Lab
3192
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
6
Bing Ren, UCSD
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
1
inconsistent ontology term
files.file_type!
bedpe
organ_slims!
liver
BIOSAMPLE
ASSAY
330 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
STARR-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
cell line
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
1
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