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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
507
ChIP-seq
180
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
507
DNA binding
184
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
194
May, 2020
60
December, 2017
54
August, 2017
48
November, 2018
40
May, 2022
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
654
bam
582
bigWig
442
fastq
401
bed narrowPeak
335
bigBed narrowPeak
165
tsv
82
tagAlign
59
bed broadPeak
59
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
733
Homo sapiens
Biosample type
359
tissue
350
cell line
14
in vitro differentiated cells
10
primary cell
Organ
941
pancreas
733
liver
677
connective tissue
517
epithelium
490
adipose tissue
301
heart
286
brain
230
vasculature
224
blood vessel
224
kidney
159
bone element
139
artery
limb
96
musculature of body
61
eye
59
blood
59
bodily fluid
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
733
AMP
Genome assembly (visualization)
584
hg19
507
GRCh38
Lab
693
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
16
inconsistent control read length
files.file_type!
bedpe
month_released!
August, 2021
organ_slims!
limb
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
733 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
tissue
liver
143
167
20
2
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
cell line
HepG2
340
5
1
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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