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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
9
DNase-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
91
DNA binding
12
DNA accessibility
6
Transcription
5
3D chromatin structure
3
DNA methylation
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
18
control
4
RNA binding protein
4
transcription factor
Date released
47
October, 2019
45
May, 2019
9
July, 2019
August, 2021
6
November, 2017
5
June, 2019
4
March, 2020
2
February, 2020
Available data
109
bam
91
bigWig
80
bed narrowPeak
78
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
11
bed bed3+
7
tsv
6
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
118
Homo sapiens
Biosample type
83
tissue
35
primary cell
Organ
933
pancreas
756
liver
679
connective tissue
517
epithelium
490
adipose tissue
heart
286
brain
230
vasculature
224
blood vessel
224
kidney
159
bone element
139
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
22
vein
19
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
118
AMP
Genome assembly (visualization)
93
hg19
84
GRCh38
Lab
118
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bedpe
month_released!
August, 2021
organ_slims!
heart
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
tibial artery
23
2
1
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
aorta
13
1
1
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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